Cellpose
Generalist cell and nucleus segmentation across imaging modalities.
Usable from QuPath via an extension if you would rather not touch Python.
- Cost
- Free
- Hardware
- Needs a consumer GPU
- Offline
- Works without a connection
- Scanner
- Not required
- Your data
- Stays on your machine
- Licence
- BSD-3-Clause
- Maturity
- production
- From
- HHMI Janelia
What it is
Widely used generalist segmentation model that works across many microscopy types without retraining, with a human-in-the-loop retraining workflow when it does not.
Licence notes
Check the repository before any reuse.
Activity: 2,293 stars · last commit 2026-06-14 — refreshed nightly
Related
Catalogued 2026-08-02, last checked 2026-08-02. View the source record · Report an error