QuPath Cellpose Extension
Brings Cellpose and Omnipose segmentation into QuPath.
Another automatic cell-detection option inside QuPath. Needs a one-time Python setup.
- Cost
- Free
- Hardware
- Needs a consumer GPU
- Offline
- Works without a connection
- Scanner
- Not required
- Your data
- Stays on your machine
- Licence
- GPL-3.0
- Maturity
- production
- From
- EPFL BioImaging & Optics Platform
What it is
Community extension that calls a local Cellpose/Omnipose install from QuPath, adding generalist cell segmentation models to the QuPath workflow.
Caveats
Requires a working local Cellpose environment; setup is the fiddly part.
Activity: 94 stars · last commit 2026-07-06 — refreshed nightly
Related
Catalogued 2026-08-01, last checked 2026-08-01. View the source record · Report an error