HEST-1k / HEST-Bench
Paired histology and spatial transcriptomics dataset and benchmark.
- Cost
- Free
- Hardware
- Needs a consumer GPU
- Offline
- Works without a connection
- Scanner
- Not required
- Your data
- Stays on your machine
- Licence
- unknown
- Maturity
- production
- From
- Mahmood Lab, Harvard Medical School
What it is
Harmonised collection of spatial transcriptomics profiles paired with histology, plus a benchmark for predicting expression from morphology.
Licence notes
Aggregates many source datasets, each with its own terms.
Activity: 425 stars · last commit 2026-04-16 · 36,259 downloads — refreshed nightly
Related
Catalogued 2026-08-01, last checked 2026-08-01. View the source record · Report an error